| Gene | Description | Domains |
|---|---|---|
| Aque_Aqu2.1.05343_001 | Paired mesoderm homeobox protein 2B | Homeobox |
| Aque_Aqu2.1.11628_001 | Homeobox protein SIX4 | Homeobox |
| Aque_Aqu2.1.14537_001 | HNF1 alpha A splice variant 7 | HNF-1_N, Homeobox |
| Aque_Aqu2.1.17328_001 | POU domain, class 2, transcription factor 3 | Homeobox, Pou |
| Aque_Aqu2.1.21550_001 | cDNA FLJ50752, highly similar to FAS-associated factor 1 | Homeobox, UBA_4, UBX |
| Aque_Aqu2.1.27886_001 | Homeobox protein ARX | Homeobox, zf-C2H2, zf-C2H2_4 |
| Aque_Aqu2.1.28512_001 | Homeobox protein aristaless-like 4 | Homeobox |
| Aque_Aqu2.1.28825_001 | LHX1 protein | Homeobox, LIM |
| Aque_Aqu2.1.31804_001 | Medium-chain specific acyl-CoA dehydrogenase, mitochondrial | Acyl-CoA_dh_1, Acyl-CoA_dh_M, Acyl-CoA_dh_N, Homeobox |
| Aque_Aqu2.1.32715_001 | Homeobox protein SIX1 | Homeobox |
| Aque_Aqu2.1.32933_001 | Brain-specific homeobox protein homolog | Homeobox |
| Aque_Aqu2.1.33566_001 | Homeobox protein ARX | Homeobox |
| Aque_Aqu2.1.34188_001 | Calcium-binding mitochondrial carrier protein SCaMC-3 | EF-hand_5, EF-hand_7, EF-hand_8, Homeobox, Mito_carr |
| Aque_Aqu2.1.37531_001 | Paired box protein Pax-2 | Homeobox, PAX |
| Aque_Aqu2.1.38176_001 | Pituitary-specific positive transcription factor 1 | Homeobox, Pou |
| Aque_Aqu2.1.39148_001 | Homeobox protein SIX4 | Homeobox |
| Aque_Aqu2.1.40357_001 | Homeobox protein prophet of Pit-1 | Homeobox |
| Aque_Aqu2.1.40608_001 | Type I inositol 1,4,5-trisphosphate 5-phosphatase | Exo_endo_phos, Homeobox |
| Aque_Aqu2.1.40612_001 | T-cell leukemia homeobox protein 3 | Homeobox |
| Aque_Aqu2.1.40613_001 | Hematopoietically-expressed homeobox protein HHEX | Homeobox |