| Gene | Description | Domains |
|---|---|---|
| Aque_Aqu2.1.05201_001 | Transcription initiation factor IIB | TFIIB |
| Aque_Aqu2.1.05211_001 | Transcription initiation factor IIB | TFIIB |
| Aque_Aqu2.1.05277_001 | DNA (cytosine-5)-methyltransferase 1 | BAH, zf-CXXC |
| Aque_Aqu2.1.05343_001 | Paired mesoderm homeobox protein 2B | Homeobox |
| Aque_Aqu2.1.05452_001 | Jerky protein homolog-like | DDE_1, HTH_psq, HTH_Tnp_Tc5 |
| Aque_Aqu2.1.05629_001 | Forkhead box protein O3 | Fork_head |
| Aque_Aqu2.1.06194_001 | DKFZP564I0422 protein | THAP |
| Aque_Aqu2.1.06628_001 | — | HLH |
| Aque_Aqu2.1.06938_001 | Jerky protein homolog-like | DDE_1, HTH_psq, HTH_Tnp_Tc5 |
| Aque_Aqu2.1.06977_001 | DNA (cytosine-5)-methyltransferase | BAH, DNMT1-RFD, zf-CXXC |
| Aque_Aqu2.1.07053_001 | cDNA, FLJ79113, highly similar to Zinc finger SWIM domain-containing protein 3 | FAR1, MULE |
| Aque_Aqu2.1.07146_001 | Mothers against decapentaplegic homolog | MH2 |
| Aque_Aqu2.1.07362_001 | Brachyury protein | T-box |
| Aque_Aqu2.1.07434_001 | Zinc finger BED domain-containing protein 4 | Dimer_Tnp_hAT, zf-BED |
| Aque_Aqu2.1.07466_001 | Mothers against decapentaplegic homolog | MH2 |
| Aque_Aqu2.1.07551_001 | HCG1981838 | zf-BED |
| Aque_Aqu2.1.07817_001 | — | MADF_DNA_bdg |
| Aque_Aqu2.1.07892_001 | — | HTH_psq |
| Aque_Aqu2.1.08234_001 | Cyclin-D-binding Myb-like transcription factor 1 | Myb_DNA-bind_6 |
| Aque_Aqu2.1.08257_001 | cDNA FLJ14747 fis, A-NT2RP3002818, highly similar to Homo sapiens tigger transposable element derived 2 (TIGD2), mRNA | DDE_1, HTH_psq, HTH_Tnp_Tc5 |